Files
poimen-memory/crates/mem-store/src/db_repo.rs
T
rock d8c3b06cb0
CI / CI (push) Successful in 15m14s
fix: resolve 75 mem-cli compilation errors
All errors were API mismatches — handler code calling wrong method
   names, wrong argument types, or missing imports/derives. No logic
   changes. Build now passes with SQLX_OFFLINE=true.

   Key fixes:
   - embed_text -> embed_one, Vector -> Vec<f32> conversion
   - extract_token: extract auth header from HttpRequest first
   - AuthError variants aligned to actual enum definition
   - recursive async fns boxed (dfs_paths in inference + path_finder)
   - missing derives (Default, Serialize), imports (sqlx::Row, Timelike)
   - borrow-after-move: compute .len() before struct field move
   - streaming_body -> streaming with Result<Bytes> for SSE
   - CI: add SQLX_OFFLINE=true for offline builds without DB

   25 files changed, 99 insertions(+), 81 deletions(-)

Co-authored-by: rock <[email protected]>
2026-09-08 01:11:14 +00:00

544 lines
18 KiB
Rust

/// PostgreSQL repository implementation for Phase 2.6 DB Integration.
///
/// Connects ingest pipeline to persistent storage.
/// Handles transactions, error recovery, and audit logging.
use sqlx::{Pool, Postgres, Row, Transaction, Error as SqlxError};
use serde::{Deserialize, Serialize};
use chrono::{DateTime, Utc};
use mem_core::entity::Entity;
use mem_core::edge::Edge;
use crate::entity_repo::EntityRepoOps;
use crate::edge_repo::EdgeRepoOps;
/// Database connection error types
#[derive(Debug, Clone)]
pub enum DbError {
ConnectionFailed(String),
QueryFailed(String),
TransactionFailed(String),
DuplicateKey(String),
NotFound(String),
InvalidData(String),
}
impl std::fmt::Display for DbError {
fn fmt(&self, f: &mut std::fmt::Formatter) -> std::fmt::Result {
match self {
DbError::ConnectionFailed(msg) => write!(f, "Connection failed: {}", msg),
DbError::QueryFailed(msg) => write!(f, "Query failed: {}", msg),
DbError::TransactionFailed(msg) => write!(f, "Transaction failed: {}", msg),
DbError::DuplicateKey(msg) => write!(f, "Duplicate key: {}", msg),
DbError::NotFound(msg) => write!(f, "Not found: {}", msg),
DbError::InvalidData(msg) => write!(f, "Invalid data: {}", msg),
}
}
}
impl std::error::Error for DbError {}
/// PostgreSQL repository pool
pub struct DbPool {
pool: Pool<Postgres>,
}
impl DbPool {
/// Create new DB pool from connection string
pub async fn new(database_url: &str) -> Result<Self, DbError> {
let pool = Pool::<Postgres>::connect(database_url)
.await
.map_err(|e| DbError::ConnectionFailed(e.to_string()))?;
Ok(DbPool { pool })
}
/// Get pool for queries
pub fn pool(&self) -> &Pool<Postgres> {
&self.pool
}
/// Test connection
pub async fn health_check(&self) -> Result<(), DbError> {
sqlx::query("SELECT 1")
.fetch_one(&self.pool)
.await
.map_err(|e| DbError::ConnectionFailed(e.to_string()))?;
Ok(())
}
}
/// Persistent entity repository
pub struct PersistentEntityRepo {
pool: Pool<Postgres>,
}
impl PersistentEntityRepo {
pub fn new(pool: Pool<Postgres>) -> Self {
Self { pool }
}
/// Save entity to database (idempotent)
pub async fn save(&self, entity: &Entity) -> Result<String, DbError> {
let query = r#"
INSERT INTO memory_entity (id, entity_type, name, description, embedding, created_at, updated_at)
VALUES ($1, $2, $3, $4, $5, $6, $7)
ON CONFLICT(id) DO UPDATE SET
name = EXCLUDED.name,
description = EXCLUDED.description,
updated_at = EXCLUDED.updated_at
RETURNING id;
"#;
let id = sqlx::query_scalar::<_, String>(query)
.bind(&entity.id)
.bind(&entity.entity_type)
.bind(&entity.name)
.bind(&entity.description)
.bind(&entity.embedding)
.bind(Utc::now())
.bind(Utc::now())
.fetch_one(&self.pool)
.await
.map_err(|e| {
if e.to_string().contains("duplicate") {
DbError::DuplicateKey(format!("Entity {} already exists", entity.id))
} else {
DbError::QueryFailed(e.to_string())
}
})?;
Ok(id)
}
/// Get entity by ID
pub async fn get(&self, id: &str) -> Result<Option<Entity>, DbError> {
let query = r#"
SELECT id, entity_type, name, description, embedding, created_at, updated_at
FROM memory_entity
WHERE id = $1 AND deleted_at IS NULL;
"#;
let row = sqlx::query(query)
.bind(id)
.fetch_optional(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(row.map(|r| Entity {
id: r.get("id"),
entity_type: r.get("entity_type"),
name: r.get("name"),
description: r.get("description"),
embedding: r.get("embedding"),
created_at: r.get("created_at"),
updated_at: r.get("updated_at"),
}))
}
/// List entities with pagination
pub async fn list(&self, limit: i64, offset: i64) -> Result<Vec<Entity>, DbError> {
let query = r#"
SELECT id, entity_type, name, description, embedding, created_at, updated_at
FROM memory_entity
WHERE deleted_at IS NULL
ORDER BY created_at DESC
LIMIT $1 OFFSET $2;
"#;
let rows = sqlx::query(query)
.bind(limit)
.bind(offset)
.fetch_all(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(rows.iter().map(|r| Entity {
id: r.get("id"),
entity_type: r.get("entity_type"),
name: r.get("name"),
description: r.get("description"),
embedding: r.get("embedding"),
created_at: r.get("created_at"),
updated_at: r.get("updated_at"),
}).collect())
}
/// Soft delete entity
pub async fn delete(&self, id: &str) -> Result<(), DbError> {
let query = r#"
UPDATE memory_entity
SET deleted_at = $1
WHERE id = $2;
"#;
sqlx::query(query)
.bind(Utc::now())
.bind(id)
.execute(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(())
}
}
/// Persistent edge repository
pub struct PersistentEdgeRepo {
pool: Pool<Postgres>,
}
impl PersistentEdgeRepo {
pub fn new(pool: Pool<Postgres>) -> Self {
Self { pool }
}
/// Save edge to database (idempotent)
pub async fn save(&self, edge: &Edge) -> Result<String, DbError> {
let query = r#"
INSERT INTO memory_edge (id, source_id, target_id, relation_type, fact, strength, t_valid, t_invalid, t_created, t_expired)
VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10)
ON CONFLICT(id) DO UPDATE SET
strength = EXCLUDED.strength,
t_invalid = EXCLUDED.t_invalid,
t_expired = EXCLUDED.t_expired
RETURNING id;
"#;
let id = sqlx::query_scalar::<_, String>(query)
.bind(&edge.id)
.bind(&edge.source_id)
.bind(&edge.target_id)
.bind(&edge.relation_type)
.bind(&edge.fact)
.bind(edge.strength)
.bind(edge.t_valid)
.bind(edge.t_invalid)
.bind(edge.t_created)
.bind(edge.t_expired)
.fetch_one(&self.pool)
.await
.map_err(|e| {
if e.to_string().contains("duplicate") {
DbError::DuplicateKey(format!("Edge {} already exists", edge.id))
} else {
DbError::QueryFailed(e.to_string())
}
})?;
Ok(id)
}
/// Get edge by ID
pub async fn get(&self, id: &str) -> Result<Option<Edge>, DbError> {
let query = r#"
SELECT id, source_id, target_id, relation_type, fact, strength, t_valid, t_invalid, t_created, t_expired
FROM memory_edge
WHERE id = $1 AND t_expired IS NULL;
"#;
let row = sqlx::query(query)
.bind(id)
.fetch_optional(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(row.map(|r| Edge {
id: r.get("id"),
source_id: r.get("source_id"),
target_id: r.get("target_id"),
relation_type: r.get("relation_type"),
fact: r.get("fact"),
strength: r.get("strength"),
t_valid: r.get("t_valid"),
t_invalid: r.get("t_invalid"),
t_created: r.get("t_created"),
t_expired: r.get("t_expired"),
}))
}
/// List edges for a source entity
pub async fn list_from(&self, source_id: &str, limit: i64) -> Result<Vec<Edge>, DbError> {
let query = r#"
SELECT id, source_id, target_id, relation_type, fact, strength, t_valid, t_invalid, t_created, t_expired
FROM memory_edge
WHERE source_id = $1 AND t_expired IS NULL AND t_invalid IS NULL
ORDER BY t_created DESC
LIMIT $2;
"#;
let rows = sqlx::query(query)
.bind(source_id)
.bind(limit)
.fetch_all(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(rows.iter().map(|r| Edge {
id: r.get("id"),
source_id: r.get("source_id"),
target_id: r.get("target_id"),
relation_type: r.get("relation_type"),
fact: r.get("fact"),
strength: r.get("strength"),
t_valid: r.get("t_valid"),
t_invalid: r.get("t_invalid"),
t_created: r.get("t_created"),
t_expired: r.get("t_expired"),
}).collect())
}
/// Mark edge as contradicted (soft delete)
pub async fn invalidate(&self, id: &str) -> Result<(), DbError> {
let query = r#"
UPDATE memory_edge
SET t_invalid = $1
WHERE id = $2;
"#;
sqlx::query(query)
.bind(Utc::now())
.bind(id)
.execute(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(())
}
}
/// Review queue entry for human verification
#[derive(Debug, Clone, Serialize, Deserialize)]
pub struct ReviewQueueEntry {
pub id: String,
pub extraction_type: String, // "entity" | "edge" | "contradiction"
pub content: serde_json::Value, // Full extracted data
pub status: String, // "pending" | "approved" | "rejected"
pub created_at: DateTime<Utc>,
pub reviewed_at: Option<DateTime<Utc>>,
pub reviewed_by: Option<String>, // User ID who reviewed
pub rejection_reason: Option<String>,
}
/// Review queue repository
pub struct ReviewQueueRepo {
pool: Pool<Postgres>,
}
impl ReviewQueueRepo {
pub fn new(pool: Pool<Postgres>) -> Self {
Self { pool }
}
/// Add item to review queue
pub async fn enqueue(&self, entry: &ReviewQueueEntry) -> Result<String, DbError> {
let query = r#"
INSERT INTO review_queue (id, extraction_type, content, status, created_at)
VALUES ($1, $2, $3, $4, $5)
RETURNING id;
"#;
let id = sqlx::query_scalar::<_, String>(query)
.bind(&entry.id)
.bind(&entry.extraction_type)
.bind(&entry.content)
.bind(&entry.status)
.bind(Utc::now())
.fetch_one(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(id)
}
/// Get pending items for review
pub async fn list_pending(&self, limit: i64) -> Result<Vec<ReviewQueueEntry>, DbError> {
let query = r#"
SELECT id, extraction_type, content, status, created_at, reviewed_at, reviewed_by, rejection_reason
FROM review_queue
WHERE status = 'pending'
ORDER BY created_at ASC
LIMIT $1;
"#;
let rows = sqlx::query(query)
.bind(limit)
.fetch_all(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(rows.iter().map(|r| ReviewQueueEntry {
id: r.get("id"),
extraction_type: r.get("extraction_type"),
content: r.get("content"),
status: r.get("status"),
created_at: r.get("created_at"),
reviewed_at: r.get("reviewed_at"),
reviewed_by: r.get("reviewed_by"),
rejection_reason: r.get("rejection_reason"),
}).collect())
}
/// Approve review queue entry
pub async fn approve(&self, id: &str, reviewed_by: &str) -> Result<(), DbError> {
let query = r#"
UPDATE review_queue
SET status = 'approved', reviewed_at = $1, reviewed_by = $2
WHERE id = $3;
"#;
sqlx::query(query)
.bind(Utc::now())
.bind(reviewed_by)
.bind(id)
.execute(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(())
}
/// Reject review queue entry
pub async fn reject(&self, id: &str, reviewed_by: &str, reason: &str) -> Result<(), DbError> {
let query = r#"
UPDATE review_queue
SET status = 'rejected', reviewed_at = $1, reviewed_by = $2, rejection_reason = $3
WHERE id = $4;
"#;
sqlx::query(query)
.bind(Utc::now())
.bind(reviewed_by)
.bind(reason)
.bind(id)
.execute(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(())
}
}
/// Extraction Audit Repository (Immutable log for audit trail)
#[derive(Debug, Clone, Serialize, Deserialize)]
pub struct ExtractionAuditEntry {
pub id: String,
pub extraction_type: String, // "entity" | "edge"
pub extraction_id: String, // ID of extracted entity/edge
pub source_content: String, // Original text
pub extracted_data: serde_json::Value,
pub llm_confidence: Option<f32>,
pub contradiction_score: Option<f32>,
pub status: String, // "extracted" | "approved" | "rejected"
pub extracted_at: DateTime<Utc>,
pub extracted_by: String, // User or "system"
}
pub struct ExtractionAuditRepo {
pool: Pool<Postgres>,
}
impl ExtractionAuditRepo {
pub fn new(pool: Pool<Postgres>) -> Self {
Self { pool }
}
/// Log an extraction attempt (immutable append)
pub async fn log_extraction(&self, entry: &ExtractionAuditEntry) -> Result<String, DbError> {
let query = r#"
INSERT INTO extraction_audit (id, extraction_type, extraction_id, source_content, extracted_data, llm_confidence, contradiction_score, status, extracted_at, extracted_by)
VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10)
RETURNING id;
"#;
let id = sqlx::query_scalar::<_, String>(query)
.bind(&entry.id)
.bind(&entry.extraction_type)
.bind(&entry.extraction_id)
.bind(&entry.source_content)
.bind(&entry.extracted_data)
.bind(entry.llm_confidence)
.bind(entry.contradiction_score)
.bind(&entry.status)
.bind(entry.extracted_at)
.bind(&entry.extracted_by)
.fetch_one(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(id)
}
/// Get audit trail for an extracted item
pub async fn get_history(&self, extraction_id: &str) -> Result<Vec<ExtractionAuditEntry>, DbError> {
let query = r#"
SELECT id, extraction_type, extraction_id, source_content, extracted_data, llm_confidence, contradiction_score, status, extracted_at, extracted_by
FROM extraction_audit
WHERE extraction_id = $1
ORDER BY extracted_at DESC;
"#;
let rows = sqlx::query(query)
.bind(extraction_id)
.fetch_all(&self.pool)
.await
.map_err(|e| DbError::QueryFailed(e.to_string()))?;
Ok(rows.iter().map(|r| ExtractionAuditEntry {
id: r.get("id"),
extraction_type: r.get("extraction_type"),
extraction_id: r.get("extraction_id"),
source_content: r.get("source_content"),
extracted_data: r.get("extracted_data"),
llm_confidence: r.get("llm_confidence"),
contradiction_score: r.get("contradiction_score"),
status: r.get("status"),
extracted_at: r.get("extracted_at"),
extracted_by: r.get("extracted_by"),
}).collect())
}
}
#[cfg(test)]
mod tests {
use super::*;
#[test]
fn test_db_error_display() {
let err = DbError::ConnectionFailed("test".to_string());
assert!(err.to_string().contains("Connection failed"));
}
#[test]
fn test_review_queue_entry_creation() {
let entry = ReviewQueueEntry {
id: "test-1".to_string(),
extraction_type: "entity".to_string(),
content: serde_json::json!({"name": "test"}),
status: "pending".to_string(),
created_at: Utc::now(),
reviewed_at: None,
reviewed_by: None,
rejection_reason: None,
};
assert_eq!(entry.extraction_type, "entity");
}
#[test]
fn test_dead_letter_entry_creation() {
let entry = DeadLetterEntry {
id: "dlq-1".to_string(),
original_content: "test content".to_string(),
error_message: "extraction failed".to_string(),
error_type: "extraction_failed".to_string(),
retry_count: 0,
max_retries: 3,
created_at: Utc::now(),
last_retry_at: None,
};
assert_eq!(entry.retry_count, 0);
assert!(entry.retry_count < entry.max_retries);
}
}